Fungal genomes - Benagen

TECHNOLOGY SERVICES

Product introduction
Common problem
Classic case
Result display

The fungal genome assembly based on Nanopore sequencing and used a variety of splicing software and methods to find the optimal assembly strategy and construct high-quality genome contig sequences. After two rounds of Racon error correction, the second-generation data is used for two rounds of Pilon error correction, turns out a high-quality map of the fungal genome which almost at the chromosome level .

Really case
Note: The number of chromosomes assembled of M01 and M02 is consistent with previous reports and karyotype analysis, almost completed genome.

The advantages of the high-quality map of fungal genome
can span high-repetition and high-complex regions, and solve the assembly problem of high-repetition and high-heterozygous genomes.
Genome assembly metrics span from Kb to Mb, resulting in a high-quality map at the near-chromosomal level.
The methylation modification can be directly detected, which is of great significance for the study of epigenetics.

Paper recommend
Recent Asian origin of chytrid fungi causing global amphibian declines[J]. ence, 2018, 360(6389):621.
Suresh P , Hiroshi H , Ishijima S A , et al. Utilization of Hybrid Assembly Approach to Determine the Genome of an Opportunistic Pathogenic Fungus, Candida albicans TIMM 1768[J]. Genome Biology and Evolution, 2018(8):8.
Cui C , Herlihy J H , Bombarely A , et al. Draft Assembly of Phytophthora capsici from Long-Read Sequencing Uncovers Complexity[J]. Molecular Plant-Microbe Interactions, 2019, 32(12).